Refereed Conference Paper

• H. Lin, P. Balaji, R. Poole, C. Sosa, X. Ma and W. Feng, “Massively Parallel Genomic Sequence Search on the Blue Gene/P Architecture,” IEEE/ACM International Conference for High-Performance Computing, Networking, Storage and Analysis (SC), 2008.
• P. Balaji, W. Feng and H. Lin, “Semantics-based Distributed I/O with the ParaMEDIC Framework,” ACM International Symposium on High Performance Distributed Computing (HPDC), 2008.
• P. Balaji, W. Feng, H. Lin, J. Archuleta, S. Matsuoka, A. Warren, J. Setubal, E. Lusk, R. Thakur, I. Foster, D. S. Katz, S. Jha, K. Shinpaugh, S. Coghlan and D. Reed, “Distributed I/O with ParaMEDIC: Experiences with a Worldwide Supercomputer,” International Supercomputing Conference (ISC), Distinguished Paper Award, 2008.
• H. Lin, X. Ma, J. Li, T. Yu and N. Samatova, “Adaptive Request Scheduling for Parallel Scientific Web Services,” International Conference on Scientific and Statistical Database Management (SSDBM), 2008.
• O. Thorsen, K. Jiang, A. Peters, B. Smith, H. Lin, W. Feng and C. Sosa, “Parallel Genomic Sequence-Search on a Massively Parallel System,” ACM International Conference on Computing Frontiers, 2007.
• M. Gardner, W. Feng, J. Archuleta, H. Lin and X. Ma, “Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications,” IEEE/ACM International Conference for High-Performance Computing, Networking, Storage and Analysis (SC), Best Paper Finalist, 2006.
• A. Ching, W. Feng, H. Lin, X. Ma and A. Choudhary, “Exploring I/O Strategies for Parallel Sequence Database Search Tools with S3aSim,” ACM International Symposium on High Performance Distributed Computing (HPDC), 2006.
• H. Lin, X. Ma, P. Chandramohan, A. Geist and N. Samatova, “Efficient Data Access for Parallel BLAST,” IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2005.

Other Publications

• H. Lin, X. Ma, J. Li, T. Yu and N. Samatova, "Processor and data scheduling for online parallel sequence database servers." In Technical Report TR-2007-23. NCSU, 2007.
• P. Balaji, W. Feng, J. Archuleta, H. Lin, R. Kettimuttu, R. Thakur and X. Ma, "Semantics-based Distributed I/O for mpiBLAST (short paper)," In the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP), 2008.