Publications

Bibliography (full-length articles)

h-index as of December 21, 2012 is 39
Average Citations per Item as of December 21, 2012 is 22.82
Sum of the Times Cited as of December 21, 2012 is 4,587

1994Back to top

  • 1. “Quantitative Measurement of Cyclosporin A in Blood by Time-of-Flight Mass Spectrometry” D. C. Muddiman, A. I. Gusev, A. Proctor, D. M. Hercules, R. Venkataramanan, and W. Diven, Analytical Chemistry, 1994, 66, 14, 2362-2368.
  • 2. “Characterization of Polystyrene on Etched Silver using Ion Scattering and X-ray Photoelectron Spectroscopy: Correlation of Secondary Ion Yield in Time-of-Flight SIMS with Surface Coverage” D. C. Muddiman, A. H. Brockman, A. Proctor, M. Houalla, and D. M. Hercules, Journal of Physical Chemistry, 1994, 44, 11570-11575.

1995Back to top

  • 3. “Simultaneous Quantification of Cyclosporin A and its Major Metabolites by TOF-SIMS and MALDI/TOF-MS Utilizing Data Analysis Techniques: A Comparison with High Performance Liquid Chromatography” D. C. Muddiman, A. I. Gusev, K. Stoppek Langner, A. Proctor, D. M. Hercules, P. Tata, R. Venkataramanan, and W. Diven, Journal of Mass Spectrometry, 1995, 30, 1469-1479 (1995).
  • 4. “Application of Sequential Paired Covariance to Capillary Electrophoresis Electrospray Ionization Time-of-Flight Mass Spectrometry: Unraveling the Signal from the Noise in the Electropherogram” D. C. Muddiman, A. L. Rockwood, Q. Gao, J. C. Severs, H. R. Udseth, R. D. Smith and A. Proctor, Analytical Chemistry, 1995, 67, 4371-4375.

1996Back to top

  • 5. “Direct Quantification of Cocaine in Urine by Time-of-Flight Mass Spectrometry” D. C. Muddiman, A. I. Gusev, L. B. Martin, and D.M. Hercules, Fresenius' Journal of Analytical Chemistry, 1996, 354, 103-110.
  • 6. “Analysis of Double-stranded Polymerase Chain Reaction Products from the Bacillus cereus Group by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” D. S. Wunschel, K. F. Fox, A. Fox, J. E. Bruce, D. C. Muddiman and R. D. Smith, Rapid Communications in Mass Spectrometry, 1996, 10, 29-35.
  • 7. “Important Aspects Concerning the Quantification of Biomolecules by Time-of-Flight Secondary Ion Mass Spectrometry” D. C. Muddiman, A. J. Nicola, A. Proctor, and D. M. Hercules, Applied Spectroscopy, 1996, 50, 161-166.
  • 8. "Enhancement of Ion Intensity in Time-of-Flight Secondary-Ionization Mass Spectrometry” A. J. Nicola, D. C. Muddiman, and D. M. Hercules, Journal of the American Society for Mass Spectrometry, 1996, 7, 467-472.
  • 9. “Charge-State Reduction with Improved Signal Intensity of Oligonucleotides in Electrospray Ionization Mass Spectrometry” D. C. Muddiman, Xueheng Cheng, H. R. Udseth and R. D. Smith, Journal of the American Society of Mass Spectrometry, 1996, 7, 697-706.
  • 10. “A Quantitative Study of in vitro Hepatic Metabolism of Tacrolimus (FK-506) Using Secondary Ion and Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry” A. I. Gusev, D. C. Muddiman, A. Proctor, A. G. Sharkey, D. M. Hercules, P. N. V. Tata, and R. Venkataramanan, Rapid Communications in Mass Spectrometry, 1996, 10, 1215-1218.
  • 11. “Design and Self-Assembly of Nanoscale Organoplatinum Macrocycles” J. Manna, J. A. Whiteford, P. J. Stang, D. C. Muddiman, and R. D. Smith, Journal of the American Chemical Society, 1996, 118, 8731-8732.
  • 12. “Characterization of PCR Products from Bacilli Using Electrospray Ionization FTICR Mass Spectrometry” D. C. Muddiman, D. S. Wunschel, C. Liu, L. Pasa-Tolic, K. F. Fox, A. Fox, G. A. Anderson, and R. D. Smith, Analytical Chemistry, 1996, 68, 3705-3712.

1997Back to top

  • 13. "Length and Base Composition of PCR-Amplified Nucleic Acids Using Mass Measurements from Electrospray Ionization Mass Spectrometry" D.C. Muddiman, G.A. Anderson, S.A. Hofstadler, and R.D. Smith. Analytical Chemistry, 1997, 69, 1543-1549.
  • 14. "Improving the Microdialysis Procedure for Electrospray Ionization-Mass Spectrometry of Biological Samples" C. Liu, D.C. Muddiman, K. Tang, and R.D. Smith. Journal of Mass Spectrometry, 1997, 32, 425-431.
  • 15. “Molecular Architecture via Coordination: Marriage of Crown Ethers and Calixarenes with Molecular Squares, Unique Tetranuclear Metallamacrocycles from Metallacrown Ether and Metallacalixarene Complexes via Self-Assembly” P.J. Stang, D.H. Cao, K. Chen, G.M. Gray, D.C. Muddiman, and R.D. Smith. Journal of the American Chemical Society, 1997, 119, 22, 5163-5168.
  • 16. "Application of Sequential Paired Covariance to Liquid Chromatography-Mass Spectrometry Data: Enhancements in Both the Signal-to-Noise Ratio and the Resolution of Analyte Peaks in the Chromatogram" D.C. Muddiman, B.M. Huang, G.A. Anderson, A. Rockwood, S.A. Hofstadler, M.S. Weir-Lipton, A. Proctor; Q. Wu, R.D. Smith, Journal of Chromatography A., 1997, 771, 1-7.
  • 17. “Transition-Metal-Mediated Rational Design and Self-Assembly of Chiral, Nanoscale Supramolecular Polyhedra with Unique T-Symmetry” P.J. Stang, B. Olenyuk, D.C. Muddiman, and R.D. Smith. Organometallics, 1997, 16, 14, 3094-3096.
  • 18. “Nanoscale Tectonics: Self-Assembly, Characterization, and Chemistry of a Novel Class of Organoplatinum Square Macrocycles” J. Manna, C.J. Kuehl, J.A. Whiteford, P.J. Stang, D.C. Muddiman, S.A. Hofstadler, and R.D. Smith. Journal of the American Chemical Society, 1997, 119, 48, 11611-11619.

1998Back to top

  • 19. “Heterogeneity in Bacillus cereus PCR Products Detected by ESI-FTICR Mass Spectrometry” D.S. Wunschel, D.C. Muddiman, K.F. Fox, A. Fox, and R.D. Smith, Analytical Chemistry, 1998, 70, 1203-1207.
  • 20. “Nanoelectrospray Mass Spectrometry Using Non-Metalized Tapered (50  10 μm) Fused-Silica Capillaries” J.C. Hannis and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 1998, 12, 443-448.
  • 21. “Comprehensive Nomenclature for the Fragment Ions Produced from Collisional Activation of Peptide Nucleic Acids” J.W. Flora and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 1998, 12, 759-762.

1999Back to top

  • 22. “Quantification of Singly-Charged Biomolecules by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry using an Internal Standard” E.F. Gordon and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 13, 164-171 (1999).
  • 23. “Characterization of a Microdialysis Approach to Prepare Polymerase Chain Reaction Products for Electrospray Ionization Mass Spectrometry Using On-Line Ultraviolet Absorbance Measurements and Inductively Coupled Plasma-Atomic Emission Spectroscopy” J.C. Hannis and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 1999, 13, 5, 323-330.
  • 24. “Accurate Characterization of the Tyrosine Hydroxylase Forensic Allele 9.3 through Development of Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” J.C. Hannis and D.C. Muddiman. Rapid Communications in Mass Spectrometry, 1999, 13, 954-962.
  • 25. “Precise Mass Measurement of a Double-Stranded 500 Base-Pair (309 kDa) Polymerase Chain Reaction Product by Negative Ion Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” D.C. Muddiman, A.P. Null and J.C. Hannis, Rapid Communications in Mass Spectrometry, 1999, 13, 1201-1204.
  • 26. “Hydropathic Influences on the Quantification of Equine Heart Cytochrome c Using Relative Ion Abundance Measurements by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” E.F. Gordon, B.A. Mansoori, C.F. Carroll, and D.C. Muddiman. Journal of Mass Spectrometry, 1999, 34, 10, 1055-1062.
  • 27. “Consequences of Nucleic Acid Conformation on the Binding of a Trinuclear Platinum Drug” M.B.G. Kloster, J.C. Hannis, D.C. Muddiman, and N.P. Farrell. Biochemistry, 1999, 38, 45, 14731-14737.
  • 28. “Hemoglobinase Activity of the Lysine Gingipain Protease (Kgp) of Porphyromonas gingivalis W83” J.P. Lewis, J.A. Dawson, J.C. Hannis, D.C. Muddiman and F.L. Macrina. Journal of Bacteriology, 1999, 181, 16, 4905-4913.

2000Back to top

  • 29. “Preparation of Single-Stranded PCR Products for Electrospray Ionization Mass Spectrometry Using the DNA Repair Enzyme Lambda Exonuclease” A.P. Null, J.C. Hannis, and D.C. Muddiman. The Analyst, 2000, 125, 4, 619-625.
  • 30. “An Experimental and Theoretical Study of the Gas-Phase Decomposition on Mono-Protonated Peptide Nucleic Acids” J.W. Flora, D.D. Shillady, and D.C. Muddiman. Journal of the American Society for Mass Spectrometry, 2000, 11, 615-625.
  • 31. “A Dual Electrospray Ionization Source Combined with Hexapole Accumulation to Achieve High Mass Accuracy of Biopolymers in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” J.C. Hannis and D.C. Muddiman. Journal of the American Society for Mass Spectrometry, 2000, 11, 876-883.

2001Back to top

  • 32. “Homogeneous Preparations of 3’-Phosphogylcolate-Terminated Oligodeoxynucleotides from Bleomycin-Treated DNA as Verified by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” S. Chen, J.C. Hannis, J.W. Flora, D.C. Muddiman, K. Charles, Y. Yu, L.F. Povirk. Analytical Biochemistry, 2001, 289, 274-280.
  • 33. “Impact of Ion Cloud Densities on the Measurement of Relative Ion Abundances in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Experimental Observations of Coulombically-Induced Cyclotron Radius Perturbations and Ion Cloud Dephasing Rates” E.F. Gordon and D.C. Muddiman, Journal of Mass Spectrometry, 2001, 36, 2, 195-203.
  • 34. “Detection of Double-Stranded PCR Amplicons at the Attomole Level Electrosprayed from Low Nanomolar Solutions using FT-ICR Mass Spectrometry” J.C. Hannis and D.C. Muddiman. Frensius’ Journal of Analytical Chemistry, 2001, 369, 3/4, 246-251.
  • 35. “Genotyping Short Tandem Repeats Using Flow Injection and Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” J.C. Hannis and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2001, 15, 348-350.
  • 36. “High Mass Accuracy of Product Ions Produced by SORI-CID Using a Dual Electrospray Ionization Source Coupled with FTICR Mass Spectrometry” J.W. Flora, J.C Hannis and D.C. Muddiman, Analytical Chemistry, 2001, 73, 6, 1247-1251.
  • 37. “Complete Sequencing of Mono-Deprotonated Peptide Nucleic Acids by Sustained Off-Resonance Irradiation Collision-Induced Dissociation” J.W. Flora and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2001, 12, 7, 805-809.
  • 38. “Selective, Sensitive, and Rapid Phosphopeptide Identification in Enzymatic Digests Using ESI-FTICR-MS with Infrared Multiphoton Dissociation” J.W. Flora and D.C. Muddiman, Analytical Chemistry, 2001, 73, 3305-3311.
  • 39. “Genotyping of Simple and Compound Short Tandem Repeat Loci Using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” A.P. Null, J.C. Hannis, and D.C. Muddiman, Analytical Chemistry, 2001, 73, 4514-4521.

2002Back to top

  • 40. “CEPH Family 1362 STR Database: An Online Resource for Characterization of PCR Products Using Electrospray Ionization Mass Spectrometry” A.P. Null and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2002, 13, 1, 89-90.
  • 41. “Solution Composition and Thermal Denaturation for the Production of Single-Stranded PCR Amplicons: Piperidine-Induced Destabilization of the DNA Duplex?” J. B. Mangrum, J.W. Flora, and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2002, 13, 3, 232-240.
  • 42. “Evaluation of Sample Preparation Techniques for High-Sensitivity Mass Measurements of PCR Products using ESI-FT-ICR-MS” A.P. Null, L.T. George, and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2002, 13, 4, 338-344.
  • 43. “Gas-Phase Ion Unimolecular Dissociation for Rapid Phosphopeptide Mapping by IRMPD in a Penning Ion Trap: An Energetically Favored Process” J.W. Flora and D.C. Muddiman, Journal of the American Chemical Society, 2002, 124, 23, 6546-6547.
  • 44. “Dual-micro-ESI Source for Precise Mass Determination on a Quadrupole Time-of-Flight Mass Spectrometer for Genomic and Proteomic Applications” J.W. Flora, A.P. Null, and D.C. Muddiman, Analytical and Bioanalytical Chemistry, Advances in Optical Spectroscopy and Mass Spectrometry, 2002, 373, 7, 538-546.
  • 45. “Tailoring the Gas-Phase Dissociation and Determining the Relative Energy of Activation for Dissociation of 7-Deaza Modified Oligonucleotides Containing a Repeating Motif” J.C. Hannis and D.C. Muddiman, International Journal of Mass Spectrometry and Ion Processes, 2002, 219, 139-150.

2003Back to top

  • 46. “1H NMR and electrospray mass spectrometry of the mono-ionized Bis(2,2-bis(4,5-dimethylimidazole)chloronitrosylruthenium(II) complex” T.W. Stringfield, K.V. Somayajula, D.C. Muddiman, J.F. Flora, and R.E. Shepherd, Inorganica Chemica Acta, 2003, 343, 317-328.
  • 47. “Implications of Hydrophobicity and Free Energy of Solvation for Characterization of Nucleic Acids by Electrospray Ionization Mass Spectrometry” A.P. Null, A.I. Nepomuceno, and D.C. Muddiman, Analytical Chemistry, 2003, 75, 1331-1339.
  • 48. “Advantages of Thermococcus kodakaraenis (KOD) DNA Polymerase for PCR-Mass Spectrometry Based Analyses” L.M. Benson, A.P. Null, and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2003, 14, 601-604.
  • 49. “Mass Spectral Determination of Skeletal/Cardiac Actin Isoform Ratios in Cardiac Muscle” H.R. Bergen, III, K. Ajtai, T.P. Burghardt, A.I. Nepomuceno, and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2003, 17, 1467-1471.
  • 50. “Determination of a Correction to Improve Mass Measurement Accuracy of Isotopically Unresolved Polymerase Chain Reaction Amplicons by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” A.P. Null and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2003, 17, 1714-1722.
  • 51. “Dual Electrospray Ionization Source for Confident Generation of Accurate Mass Tags Using Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” A.I. Nepomuceno, D.C. Muddiman, H.R. Bergen, III, J.R. Craighead, M.J. Burke, P.E. Caskey, and J.A. Allan, Analytical Chemistry, 2003, 75, 3411-3418.
  • 52. “Coordination-Driven Self-Assembly of Supramolecular Cages: Heteroatom-Containing and Complementary Trigonal Prisms.” Y.K. Kryschenko, S.R. Seidel, D.C. Muddiman, A.I. Nepomuceno, and P.J. Stang, Journal of the American Chemical Society, 2003, 125, 9647-9652.
  • 53. “Naturally Processed Measles Virus Peptide Eluted From Class II HLA-DRB1*03 Recognized by T. Lymphocytes From Human Blood.” I.G. Ovsyannikova, K.L. Johnson, S. Naylor, D.C. Muddiman, and G.A. Poland, Virology, 2003, 312, 495-506.

2004Back to top

  • 54. "Identification and Characterization of Novel, Naturally Processed Measles Virus Class II HLA-DRB1 Peptides" I.G. Ovsyannikova, K.L. Johnson, D.C. Muddiman, R.A. Vierkant, G.A. Poland, Journal of Virology, 2004, 78, 42-51.
  • 55. "Enzymatic Strategies for DNA Characterization by Electrospray Ionization Mass Spectrometry" A.P. Null, L.M. Benson, and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2003, 17, 2699-706.
  • 56. “Determination of the Relative Energies of Activation for the Dissociation of Aromatic versus Aliphatic Phosphopeptides by ESI-FT-ICR-MS and IRMPD” J.W. Flora and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2004. 15, 121-127.
  • 57. “Androgens Negatively Regulate Forkhead Transcription Factor FKHR (FOXO1) Through a Proteolytic Mechanism in Prostate Cancer Cells” H. Huang, D.C. Muddiman and D.J. Tindall, Journal of Biological Chemistry, 2004, 279, 13866-13877.
  • 58. “A Method for Calculating 16O/18O Peptide Ion Ratios for the Relative Quantification of Proteomes” K.L Johnson and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2004, 15, 437-445.
  • 59. “Informed Use of Proteolytic Inhibitors in Biomarker Discovery” H.R. Bergen, M.G. Klug, M.E. Bolander, D.C Muddiman, Rapid Communications in Mass Spectrometry, 2004, 18, 1001-1002.
  • 60. “Utility of Accurate Monoisotopic Mass Measurements to Confidently Identify Lambda Exonuclease Generated Single-Stranded Amplicons Containing 7-Deaza Analogs by Electrospray Ionization FT-ICR Mass Spectrometry”, J.L. Frahm, C.J. Mason, and D.C. Muddiman, International Journal of Mass Spectrometry, 2004, 234, 79-87.
  • 61. “Evaluation of a Cleavable Stable Isotope Labeled Synthetic Peptide for Absolute Protein Quantification using LC-MS/MS” D.R. Barnidge, G.D. Hall, J.L. Stocker, and D.C. Muddiman, Journal of Proteome Research, 2004, 3, 658-661.
  • 62. "Absolute Quantification of the Model Biomarker Prostate-Specific Antigen in Serum by LC-MS/MS Using Protein Cleavage and Isotope Dilution Mass Spectrometry" D.R. Barnidge, M.K. Goodmanson, G.G. Klee, and D.C. Muddiman, Journal of Proteome Research, 2004, 3, 644-652.
  • 63. “Analytical Performance of a Venturi Device Integrated into an Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometer for Analysis of Nucleic Acids” A.M. Hawkridge, L. Zhou, M.L Lee, and D.C. Muddiman, Analytical Chemistry, 2004, 76, 4118-4122.
  • 64. “Discovery of Ovarian Cancer Biomarkers in Serum Using NanoLC Electrospray Ionization TOF and FT-ICR Mass Spectrometry” H. R. Bergen, III, G. Vasmatzis, W.A. Cliby, K.L. Johnson, A.L. Oberg and D.C. Muddiman, Disease Markers, 2003-2004, 19, 239-249.
  • 65. “Identification of Transthyretin Variants using Sequential Proteomic and Genomic Analysis” H.R. Bergen, III, S.R. Zeldenrust, M.L. Butz, D.S. Snow, P.J. Dyck, P.J.B. Dyck, C.J. Klein, J.F. O’Brien, S.N. Thibodeau, and D.C. Muddiman, Clinical Chemistry, 2004, 50, 1544-1552.
  • 66. “Detection of Genetic Variants of Transthyretin by LC Dual Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” A.I. Nepomuceno, C.J. Mason, D.C. Muddiman, H.R. Bergen, III and S.R. Zeldenrust, Clinical Chemistry, 2004, 50, 1535-1543.
  • 67. “Analysis of the Low Molecular Weight Fraction of Serum by LC-DualESI-FT-ICR Mass Spectrometry: Precision of Retention Time, Mass, and Ion Abundance” K.L. Johnson, C.J. Mason, D.C. Muddiman, and J.E. Eckel, Analytical Chemistry, 2004, 76(17), 5097-5103.
  • 68. “Accurate and Expedited Diagnosis of Amyloidotic Transthyretin Neuropathy: Proteomic and Genomic Approach” C.J. Klein, C.H. Kim, P.J.B. Dyck, S.R. Zeldenrust, H.R. Bergen, J.F. O’Brien, A.I. Nepomuceno, M.L. Butz, S.I. Thibodeau, Annuals of Neurology, 2004, 56 (8) S29.

2005Back to top

  • 69. “Derivatives of Pentamidine Designed to Target the Leishmania Lipophosphoglycan” K.L. Kramp, K. Buck, J.W. Flora, D.C. Muddiman, K.M. Slunt, T.A. Houston, Tetrahedron Letters, 2005, 46(4), 695-698.
  • 70. “Effect of Post-Excitation Radius on Ion Abundance, Mass Measurement Accuracy, and Isotopic Distributions in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” A.M. Hawkridge, A.I. Nepomuceno, S.L. Lovik, C.J. Mason, D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2005, 19(7), 915-918.
  • 71. “Protein Expression Profiling of CLL B cells using Replicate Off-Line Strong Cation Exchange Chromatography and LC-MS/MS” D.R. Barnidge, R.C. Tschumper, D.F. Jelinek, D.C. Muddiman, and N.E. Kay, Journal of Chromatography B Analytical Technology Biomedical Life Sciences, 2005, 819, 33-39.
  • 72. “Mapping Sites of Protein Phosphorylation by Mass Spectrometry Utilizing a
    Chemical-Enzymatic Approach: Characterization of Products from an a S1Casein Phosphopeptide” D.J. McCormick, M.W. Holmes, D.C. Muddiman, B.J. Madden, Journal of Proteome Research, 2005, 4(2), 424-434.
  • 73. “Statistical Evaluation of Internal and External Calibration Laws Utilized in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” D.C. Muddiman and A.L. Oberg, Analytical Chemistry, 2005, 77(8), 2406-2414.
  • 74. “Leveling Response Factors in the Electrospray Ionization Process Using a Heated Capillary Interface” J.L. Frahm, M.J. Burke, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2005, 16(5), 772-778.
  • 75. “Déjà vu all over again: SKIN-CAP is still available and still contains a high potency glucocorticosteroid” D.L. Swanson, M.R. Pittelkow, L.M. Benson, A.M. Hawkridge, D.C. Muddiman, Archives of Dermatology, 2005, 141(6), 801-803.
  • 76. “Evaluation of Protein Depletion Methods for the Analysis of Total-, Phospho- and Glycoproteins in Lumbar Cerebrospinal Fluid” Y. Ogata, M.C. Charlesworth, D.C. Muddiman, Journal of Proteome Research, 2005, 4(3), 837-845.
  • 77. “Primary Trabecular Meshwork Cells Incubated in Human Aqueous Humor Differ from Cells Incubated in Serum Supplements” M.P Fautsch, K.G. Howell, A.M. Vrabel, M.C. Charlesworth, D.C. Muddiman, D.H. Johnson, Investigative Ophthalmology and Vision Science, 2005, 46(8), 2848-2856.
  • 78. “Quantitative Protein Expression Analysis of CLL B cells from Mutated and
    Unmutated IgVH Subgroups using Acid-Cleavable Isotope-Coded Affinity Tag
    Reagents” D.R. Barnidge, D.F. Jelinek, D.C. Muddiman, N.E. Kay, Journal of
    Proteome Research
    , 2005, 4 (4), 1310-1317.
  • 79. “Coordination-Driven Self-Assemblies with a Carborane Backbone” H. Jude, H.
    Disteldorf, S. Fischer, T. Wedge, A.M. Hawkridge, A.M. Arif, M. F. Hawthorne, D. C. Muddiman, P. J. Stang, Journal of the American Chemical Society, 2005, 127, (34) 12131-12139.
  • 80. “Normalization of Relative Peptide Ratios Derived from In Gel Digests:
    Applications to Protein Variant Analysis at the Peptide Level” H.R. Bergen, D.C.
    Muddiman, J.D. Hoyer, J.F. O'Brien, Rapid Communications in Mass Spectrometry, 2005, 19 (19), 2871-2877.
  • 81. “Gentle Protein Ionization Assisted by High Velocity Gas Flow” P.Yang, R.G.
    Cooks, Z. Ouyang, A.M. Hawkridge, D.C. Muddiman, Analytical Chemistry,
    2005, 77 (19), 6174-6183.
  • 82. “Accurate Mass Precursor Ion Data and Tandem Mass Spectrometry Identify a
    HLA Class I Peptide Originating from Vaccinia Virus” K.L. Johnson, B.J.
    Madden, I.G. Ovsyannikova, G.A. Poland, D.C. Muddiman, Journal of the
    American Society for Mass Spectrometry
    , 2005, 16(11), 1812-1817.
  • 83. “Quantitative Mass Spectral Evidence for the Absence of Circulating Brain
    Natriuretic Peptide (BNP-32) in Severe Human Heart Failure” A.M.
    Hawkridge, D. M. Heublein, H. R. Bergen, III, J. C. Burnett, Jr., D. C.
    Muddiman, Proceedings of the National Academy of Sciences USA, 2005,
    102(48) 17442-17447.
  • 84. “Identification of Class II HLA-DRB1*03-restricted Measles Virus Peptides by
    2D-Liquid Chromatography Tandem Mass Spectrometry” K.L. Johnson, I.G.
    Ovsyannikova, G.A. Poland, D.C. Muddiman, Journal of Proteome Research, 2005, 4(6), 2243-2249.
  • 85. “Reproducibility of Retention Time using a Splitless nanoLC Coupled to an ESI-FTICR Mass Spectrometer” D.C. Muddiman, C.J. Mason, and K.L. Johnson, Journal of Biomolecular Techniques, 2005, 16, 4, 414-422. (not abstracted)

2006Back to top

  • 86. “Chromatin Assembly Factor-1 Interacts with Histone H3 Methylated at Lysine 79 in the Processes of Epigenetic Silencing and DNA Repair” H. Zhou. B.J. Madden, D.C. Muddiman, Z. Zhang, Biochemistry, 2006, 45(9), 2852-2861.
  • 87. “Identification of subunit-subunit interactions in bacteriophage P22 procapsids by chemical cross-linking and mass spectrometry” S. Kang, A. M. Hawkridge, K. L. Johnson, D. C. Muddiman, P.E Prevelige, Journal of Proteome Research, 2006, 5, 2, 370-377.
  • 88. “Accessible Proteomics Space and its Implications for Peak Capacity for Zero-, One- and Two- Dimensional Separations Coupled with FT-ICR and TOF Mass Spectrometry” J.L Frahm, B.E. Howard, S. Heber, D.C. Muddiman, Journal of Mass Spectrometry, 2006, 41, 3, 281-288.
  • 89. “Molecular Architecture via Coordination: Self-Assembly of Nanoscale Hexagonal
    Metallodendrimers with Designed Building Blocks” H. Yang, N. Das, F. Huang, A.M. Hawkridge, D.C. Muddiman, P.J. Stang, Journal of American Chemical Society, 2006, 128 (31), 10014-10015.
  • 90. “Incorporation of 2,6-Di(4,4’-dipyridyl)-9-Thiabicyclo[3.3.1]nonane into Discrete
    2D Supramolecules via Coordination-Driven Self-Assembly” H. Yang, N. Das, F.
    Huang, A.M. Hawkridge, D.D. Diaz, A.M. Arif, M.G. Finn, D.C. Muddiman, and
    P.J. Stang, Journal of Organic Chemistry, 2006, 71 (17) 6644-6647.
  • 91. “Direct High Resolution Protein Analysis by Desorption Electrospray Ionization
    (DESI) Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” M.S.
    Bereman, L. Nyadong, F.M. Fernandez, D.C. Muddiman, Rapid
    Communications in Mass Spectrometry
    , 2006, 20 (22) 3409-3411.
  • 92. “Elevated Levels of Phosphorylated Fibrinogen Alpha Isoforms and Differential Expression of Other Post-translationally Modified Proteins in the Plasma of
    Ovarian Cancer Patients” Y. Ogata, C.J. Holtz-Hepplman, M.C. Charlesworth,
    W.A. Cliby, H.R. Bergen III, D.A. Saggese, D.C. Muddiman, Journal of Proteome
    Research
    , 2006, 5(12), 3318-3325.
  • 93. “Generation and Detection of Multiply-Charged Peptides and Proteins by Matrix-
    Assisted Laser Desorption Electrospray Ionization (MALDESI) Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” J.S. Sampson, A.M. Hawkridge, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2006, 17 (12), 1712-1716.

2007Back to top

  • 94. “Sub Parts-Per-Million Mass Measurement Accuracy of Intact Proteins and Product Ions Achieved using a Dual Electrospray Ionization Quadrupole
    Fourier Transform Ion Cyclotron Resonance Mass Spectrometer” D.K. Williams, Jr., A.M. Hawkridge, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2007, 18, 1-7.
  • 95. “Coordination-Driven Self-Assembly of Metallodendrimers Possessing Well- Defined and
    Controllable Cavities as Cores” H Yang, A.M. Hawkridge, S.D. Huang, N. Das, S.D. Bunge, D.C. Muddiman, P.J. Stang, Journal of the American Chemical Society, 2007, 129 (7), 2120-2129.
  • 96. “A Method for Automatically Interpreting Mass Spectra of 18O Labeled Isotopic Clusters” C.J. Mason, T.M. Therneau, J.E. Eckel-Passow, K.J. Johnson, A.L. Oberg, J.E. Olson, K.S. Nair, D.C. Muddiman, H.R. Bergen, III, Molecular and Cellular Proteomics, 2007, 6, (2), 305-318.
  • 97. “Effect of Matrix Crystal Structure on Ion Abundance of Carbohydrates by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” T.I. Williams, D.A. Saggese, R.J. Wilcox, J.D. Martin, and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2007, 21(5), 807-811.
  • 98. “Understanding the Influence of Post-Excite Radius and Axial Confinement on
    Quantitative Proteomic Measurements using Fourier Transform-Ion Cyclotron
    Resonance Mass Spectrometry” J.L. Frahm, C.M. Capo-Velez, D.C. Muddiman,
    Rapid Communications in Mass Spectrometry, 2007, 21 (7), 1196-1204.
  • 99. “Direct Characterization of Intact Polypeptides by Matrix-Assisted Laser Desorption
    Electrospray Ionization (MALDESI) Quadrupole Fourier Transform Ion Cyclotron
    Resonance Mass Spectrometry, J.S. Sampson, A.M. Hawkridge, D.C. Muddiman, Rapid
    Communications in Mass Spectrometry
    , 2007, 21 (7), 1150-1154.
  • 100. “Achieving Augmented Limits of Detection for Peptides with Hydrophobic Alkyl Tags
    (ALiPHAT)” J.L. Frahm, I.D. Bori, D.L. Comins, A.M. Hawkridge, D.C. Muddiman,
    Analytical Chemistry, 2007, Accelerated Article, 79, 11, 3989-3995.
    Note: This manuscript was dedicated to the late A.G. Sharkey.
  • 101. “Detection of Attomole Amounts of Analyte by Desorption Electrospray Ionization Mass
    Spectrometry (DESI-MS) Determined using Fluorescence Spectroscopy”, M.S. Bereman,
    D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2007, 18 (6),
    1093-1096.
  • 102. “Parts-Per-Billion Mass Measurement Accuracy Achieved through the Combination of
    Multiple Linear Regression and Automatic Gain Control in a Fourier Transform Ion
    Cyclotron Resonance Mass Spectrometer” D.K. Williams and D.C. Muddiman, Analytical
    Chemistry
    , 2007, 79, 13, 5058-5063.
    Note: This manuscript was dedicated to Professor David M. Hercules
  • 103. “Quantitative Comparison of a Flared and a Standard Heated Metal Capillary Inlet with a Voltage-Assisted Air Amplifier on an Electrospray Ionization Linear Ion Trap Mass Spectrometer” R.B. Dixon and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2007, 21, (19), 3207-3212.
  • 104. “(Details of) The Structure Determination of the Sulfated Steriods PSDS and PADS-New Components of the Sea Lamprey (Petromyzon marinus) Migratory Pheromone” T.R. Hoye, V. Dvornikovs, J.M. Fine, K.R. Anderson, C.S. Jeffrey, D.C. Muddiman, F. Shao, P.W. Sorensen, and J. Wang, Journal of Organic Chemistry, 2007, 72 (20), 7544-7550.
  • 105. “Dual Electrospray Ionization Source for Electron-Transfer Dissociation on a Hybrid
    Linear Ion Trap-Orbitrap Mass Spectrometer” D.K. Williams, G.C. McAlister, D.M. Good,
    J.J. Coon, D.C. Muddiman, Analytical Chemistry, 2007, 79, (20), 7916-7919.
  • 106. “Remote Mass Spectrometric Sampling of Electrospray and Desorption Electrospray-
    Generated Ions Using an Air Ejector” R.B. Dixon, M.S. Bereman, D.C. Muddiman, A.M.
    Hawkridge, Journal of the American Society for Mass Spectrometry, 2007, 18, (10),
    1844-1847.
  • 107. “Differential Protein Expression in Male and Female Human Lumbar Cerebrospinal Fluid using iTRAQ Reagents after Abundant Protein Depletion” Y. Ogata, M.C. Charlesworth,
    L. Higgins, B.M. Keegan, S. Vernino, and D.C. Muddiman, Proteomics, 2007, 7, (20),
    3726-3734.
  • 108. “Probing the Mechanisms of an Air Amplifier using a LTQ-FT-ICR-MS and Fluorescence
    Spectroscopy” R.B. Dixon, D.C. Muddiman, A.M. Hawkridge, A.G. Fedorov, Journal of
    the American Society for Mass Spectrometry
    , 2007, 18, (11), 1909-1913.
  • 109. “Carbohydrate Analysis by Desorption Electrospray Ionization Fourier Transform Ion
    Cyclotron Resonance Mass Spectrometry” M.S. Bereman, T.I. Williams, D.C. Muddiman, Analytical Chemistry, 2007, 79, (22), 8812-8815.
  • 110. “A Highly Efficient Approach to the Self-assembly of Hexagonal Cavity-Cored
    Tris[2]pseudorotaxanes from Several Components via Multiple Noncovalent Interactions” H.B. Yang, K. Ghosh, B.H. Northrop, Y.R. Zheng, M.M. Lyndon, D.C. Muddiman, P.J. Stang, Journal of the American Chemistry Society, 2007, 129, (46), 14187.

2008Back to top

  • 111. "A New Family of Multiferrocene Complexes with Enhanced Control of Structure and Stoichiometry via Coordination-Driven Self-Assembly and their Electrochemistry" H.B.Yang, K. Ghosh, Y. Zhao, B.H. Northrop, M.M. Lyndon, D.C. Muddiman, H.S. White, P.J. Stang, Journal of the American Chemical Society, 2008, 130 (3), 839.
  • 112. “Synthesis, Characterization, and Application of Iodoacetamide Derivatives Utilized for the ALiPHAT Strategy” D.K. Williams, C.W. Meadows, I.D. Bori, A.M. Hawkridge, D. Comins, D.C. Muddiman, Journal of the American Chemical Society, 2008, 130 (7), 2122.
  • 113. “Human Proteinpedia Enables Sharing of Human Protein Data” Mathivanan S, Ahmed M, Ahn NG, et al., Nature Biotechnology, 2008, 26 (2), 164-167.
  • 114. "Coordination-Driven Self-Assembly of Cavity-Cored Multiple Crown Ether Derivatives and poly[2]pseudorotaxanes" K. Ghosh, H.B. Yang, B.H. Northrop, M.M. Lyndon, Y.R. Zheng, D.C. Muddiman, P.J. Stang, Journal of the American Chemical Society, 2008, 130 (15), 5320-5334.
  • 115. “Effect of Plasma Protein Depletion on BNP-32 Recovery“ A.M. Hawkridge, D.C.
    Muddiman, Clinical Chemistry, 2008, 54 (5), 933-934.
  • 116. "Mass Measurement Accuracy Comparisons Between a Double-Focusing Magnetic Sector and a Time-of-Flight Mass Analyzer" M.S. Bereman, M.M. Lyndon, R.B. Dixon, D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2008, 22 (10), 1563-1566.
  • 117. “Studying O-linked Protein Glycosylations in Human Plasma“ T.I. Williams, D.A. Saggese, D.C. Muddiman, Journal of Proteome Research, 2008, 7 (6), 2562-2568.
  • 118. “Coordination-Driven Face-Directed Self-Assembly of Trigonal Prisms. Face-Based Conformational Chirality”, D.C. Caskey, T. Yamamoto, C. Addicott, R.K. Shoemaker, J. Vacek, A.M. Hawkridge, D.C. Muddiman, G.S. Kottas, J. Michl, P.J. Stang, Journal of the American Chemical Society, 2008, 130 (24), 7620-7628.
  • 119. "Ambient Aerodynamic Ionization Source for Remote Analyte Sampling and Mass Spectrometric Analysis" R.B. Dixon, J.S. Sampson, A.M. Hawkridge, D.C. Muddiman, Analytical Chemistry, 2008, 80 (13) 5266-5271.
  • 120. “Top-Down Identification and Quantification of Stable Isotope Labeled Proteins from Aspergillus Flavus using Online Nano-Flow Reversed-Phase Liquid Chromatography Coupled to a LTQ-FTICR Mass Spectrometer “ T.S. Collier, A.M. Hawkridge, D.R. Georgianna, G.A. Payne, D.C. Muddiman, Analytical Chemistry, 2008, 80 (13), 4994-5001.
  • 121. “Temperature-Dependent Regulation of Proteins in Aspergillus flavus: Whole Organism Stable Isotope Labeling by Amino Acids” D. R. Georgianna, A.M. Hawkridge, D.C. Muddiman, G.A. Payne, Journal of Proteome Research, 2008, 7 (7), 2973-2979.
  • 122. “Development and Characterization of an Ionization Technique for Analysis of
    Biological Macromolecules: Liquid Matrix-Assisted Laser Desorption Electrospray Ionization” J.S. Sampson, A.M. Hawkridge, D.C. Muddiman, Analytical Chemistry, 2008, 80 (17), 6773-6778.
  • 123. “Investigations with O-linked Protein Glycosylations by Matrix-assisted Laser
    Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass
    Spectrometry” T.I. Williams, et al. Journal of Mass Spectrometry, 2008, 43, 1215-1223.
  • 124. “Calibration Laws Based on Multiple Linear Regression Applied to Matrix-Assisted Laser Desorption / Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry” D.K. Williams, Jr., M.A. Chadwick, T.I. Williams, D.C. Muddiman, Journal of Mass Spectrometry, 2008, 43, 12, 1659-1663.
  • 125. “Construction of a Versatile High Precision Ambient Ionization Source for Direct
    Analysis and Imaging” J. S. Sampson, A.M. Hawkridge, D.C. Muddiman, Journal of the
    American Society for Mass Spectrometry
    , 2008, 19, 1527-1534.

2009Back to top

  • 126. "Absolute Quantification of C-Reactive Protein in Human Plasma Derived from Patients with Epithelial Ovarian Cancer Utilizing Protein Cleavage Isotope Dilution Mass Spectrometry" D.K. Williams, Jr. and D.C. Muddiman, Journal of Proteome Research. 2009, 8(2), 1085-1090.
  • 127. “Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control, and Epithelial Ovarian Cancer Patients” M.S. Bereman, T.I. Williams and D.C. Muddiman, Analytical Chemistry, 2009, 81(3), 1130-1136.
  • 128. “Proteomic Characterization of Cell Membrane Blebs in Human Retinal Pigment
    Epithelium Cells” O. Alcazar, A.M. Hawkridge, T.S. Collier, S.K. Bhattacharya, D.C. Muddiman, M.E. Marin-Castano, Molecular and Cellular Proteomics, 2009, in press.
  • 129. “Generation of Multiply-Charged Peptides and Proteins by Radio Frequency Acoustic
    Desorption and Ionization for Mass Spectrometric Detection” R.B. Dixon, J.S. Sampson,
    D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2009, 20(4), 597-600.
  • 130. “Intact and Top-Down Characterization of Biomolecules and Direct Analysis using
    Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Coupled to FT-ICR
    Mass Spectrometry” J.S. Sampson, K.K. Murray, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2009, 20(4), 667-673.
  • 131. “Coupling of a Vented Column with Splitless nanoRPLC-ESI-MS for the Improved Separation and Detection of Brain Natriuetic Peptide-32 and its Proteolytic Peptides” G.L. Andrews, C.M. Shuford, J.C. Burnett Jr., A.M. Hawkridge, and D.C. Muddiman, Journal of Chromatography B, 2009, 877(10), 948-954.
  • 132. “Synthesis of Six-Component Metallodendrimers via [3+3] Coordination-Driven Self-Assembly”, H.B. Yang, B.H. Northrop, Y.R. Zheng, K. Ghosh, M.M. Lyndon, D.C. Muddiman, P.J. Stang, Journal of Organic Chemistry, 2009, 74(9), 3524-3527.
  • 133. “Atmospheric Pressure Infrared (10.6 m) Laser Desorption Electrospray Ionization (IR-LDESI) Coupled to a LTQ Fourier Transform Ion Cyclotron Resonance Mass Spectrometer”, J.S. Sampson and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2009, 23, 13, 1989-1992.
  • 134. “Development of a Robust and High Throughout Method for Profiling N-Linked Glycans Derived from Plasma Glycoproteins by NanoLC-FTICR Mass Spectrometry”, Journal of Proteome Research, 2009, 8, 7, 3764-3770.
  • 135. “Utilizing Artificial Neural Networks in MATLAB to Achieve Parts-Per-Billion Mass Measurement Accuracy with a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer”, Journal of the American Society for Mass Spectrometry, 2009, 20, 7, 13030-1310.
  • 136. “Tandem Mass Spectrometry of Thiolate-Protected Au Nanoparticles NaxAu25(SC2H4Ph)18-y(S(C2H4O)5CH3)y,” C.A. Fields-Zinna, J.S. Sampson, M.C. Crowe, J.B. Tracy, J.F. Parker, A.M. deNey, D.C. Muddiman, R.W. Murray, Journal of the American Chemical Society, 2009, 131, 88, 13844-13851.
  • 137. “Evaluation of the ALiPHAT Method for PC-IDMS and Correlation of Limits-of-Detection with Non-Polar Surface Area”, D.K. Williams, Jr., D.L. Comins, J.L. Whitten, and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2009, 20, 11, 2006-2012.
  • 138. “Characterization of Charge Separation in the Array of Micromachined UltraSonic Electrospray (AMUSE) Ion Source for Mass Spectrometry”, T.P. Forbes, R.B. Dixon, D.C. Muddiman, F.L. Degertekin, and A.G. Fedorov, Journal of the American Society for Mass Spectrometry, 2009, 20, 1684-1687.
  • 139. “Species-Dependent Hepatic Metabolism of Immunosuppressive Agent Tacrolimus (FK-506)”, P.N.V. Tata, N. Subbotina, G.J. Burckart, D.C. Muddiman, A.I. Gusev, D.M. Hercules, T.E. Starzl, R. Venkataramanan, Xenobiotica, 2009, 39, 10, 757-765. (1)

2010Back to top

  • 140. “Binding Site on Human Immunoglobulin G for the Affinity Ligand HWRGWV”, H. Yang , P.V. Gurgel, D.K. Williams Jr, B.G. Bobay, J. Cavanagh, D.C. Muddiman and R.G. Carbonell, Journal of Molecular Recognition, 2010, 23, 3, 271-282.
  • 141. “Detection of Alternative Splice Variants at the Proteome Level in a Prototrophic Organism: Aspergillus Flavus” K-Y Chang, D. R. Georgianna, S. Heber, G. A. Payne, and D. C. Muddiman, Journal of Proteome Research, 2010, 9, 3, 1209-1217.
  • 142. “Increasing the Hydrophobicity and Electrospray Response of Glycans through Derivatization with Novel Hydrazides” M.S. Bereman, D.L. Comins and D.C. Muddiman, Chemical Communications, 2010, 46, 237-239.
  • 143. "Improving Limits of Detection for B-type Natriuretic Peptide using PC-IDMS: An Application of the ALiPHAT Strategy" C.M. Shuford, D.L. Comins, J.L. Whitten, J.C. Burnett, D.C. Muddiman, Analyst, 2010, 135, 1, 36-41.
  • 144. "The Effects of Abundant Plasma Protein Depletion on Global Glycan Profiling using NanoLC FT-ICR Mass Spectrometry" M.S. Bereman, D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2010, 396, 4, 1473-1479.
  • 145. "Study of the Ionization Mechanism in Hybrid Laser Based Desorption Techniques" R.B. Dixon, D.C. Muddiman, Analyst, 2010, 135, 5, 880-882.
  • 146. "Quantitative Top-Down Proteomics of SILAC Labeled Human Embryonic Stem Cells" T.S. Collier, P. Sarkar, B. Rao, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2010, 21, 6, 879-889.
  • 147. "Interplay of Permanent Charge and Hydrophobicity in the Electrospray Ionization of Glycans" S.H. Walker, B.N. Papas, D.L. Comins and D.C. Muddiman, Analytical Chemistry, 2010, 82, 15, 6636-6642.
  • 148. "Measuring the Intra-individual Variability of the Plasma Proteome in the Chicken Model of Spontaneous Ovarian Adenocarcinoma" A.M. Hawkridge, R.B. Wysocky, J.N. Petitte, K.E. Anderson, P.E. Mozdiak, O.J. Fletcher, J.M. Horowitz, D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2010, 398, 2, 737-749.
  • 149. "Direct Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for Quantitative Proteomics", T.S. Collier, P. Sarkar, W.L. Franck, B.M. Rao, R.A. Dean, D.C. Muddiman, Analytical Chemistry, 2010, 82, 8696-8702.
  • 150. "Self-Assembly of Dendritic Tris(crown ether) Hexagons and their Complexation with Dibenzylammonium Cations", X.D. Xu, Y.B. Yang, Y.R. Zheng, Journal of Organic Chemistry, 2010, 75, 21, 7373-7380.
  • 151. "Utilizing Spectral Counting to Quantitatively Characterize Tandem Removal of Abundant Proteins (TRAP) in Human Plasma" C.M. Shuford, A.M. Hawkridge, J.C. Burnett Jr., D.C. Muddiman, Analytical Chemistry, 2010, 82, 24, 10179-10185.
  • 152. "Part I: Characterization of the Extracellular Proteome of the Extreme Thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2", G.L. Andrews, D.L. Lewis, J.S. Notey, R.M. Kelly, and D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2010, 398, 1, 377-389.
  • 153. "Part II: Defining and Quantifying Individual and Co-cultured Intracellular Proteomes of Two Thermophilic Microorganisms by GeLC-MS2 and Spectral Counting", G.L. Andrews, D.L. Lewis, J.S. Notey, R.M. Kelly, and D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2010, 398, 1, 391-404.
  • 154. "Facile Self-Assembly of Dendritic Multiferrocenyl Hexagons and Their Electrochemistry" Guang-Zhen Zhao, Li-Jun Chen, Cui-Hong Wang, Hai-Bo Yang, Koushik Ghosh, Yao-Rong Zheng, Matthew M. Lyndon, David C. Muddiman, and Peter J. Stang, Organometallics, 2010, 29 (22), 61376140.

2011Back to top

  • 155. "Increasing Proteome Coverage with Offline RP HPLC Coupled to Online RP nanoLC-MS" E Gokce, G.L. Andrews, R.A. Dean, D.C. Muddiman, Journal of Chromatography B, 2011, 879, 9-10, 610-614.
  • 156. "Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments" G.L. Andrews, R.A. Dean, A.M. Hawkridge, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2011, 22, 4, 773-783.
  • 157. "One-Year N-linked Glycome Intra-Individual and Inter-Individual Variability in the Chicken Model of Spontaneous Ovarian Adenocarcinoma" R.B. Dixon, M.S. Bereman, J.N. Petitte, A.M. Hawkridge, D.C. Muddiman, International Journal of Mass Spectrometry, 2011, 305, 2-3, 79-86. (Special Issue in Honor of Professor Cathy Costello for the Franklin-Field Award)
  • 158. "Design, Modelling, Fabrication, and Evaluation of the Air Amplifier for Improved Detection of Biomolecules by Electrospray Ionization Mass Spectrometry" G. Robichaud, R.B. Dixon, A.S. Potturi, D. Cassidy, J.R. Edwards, A. Sohn, T.A. Dow, D.C. Muddiman, International Journal of Mass Spectrometry, 2011, 300, 2-3, 99-107. (Special Issue in Honor of Scientific Career of Professor John Fenn)
  • 159. "Identification of Alternative Splice Variants in Aspergillus flavus through Comparison of Multiple Tandem MS Search Algorithms" K-Y Chang, D.C. Muddiman, BMC Genomics, 2011, 12, 358.
  • 160. "Increasing Biological Depth of Global Proteome Analyses using the High Speed Sequencing Capabilities on a Hybrid Triple Quadrupole Time-of-Flight Tandem Mass Spectrometer" G. L. Andrews, B.L. Simons, J.B. Young, A.M. Hawkridge, D.C. Muddiman, Analytical Chemistry, 2011, in revision
  • 161. "Hydrophobic Derivatization of N-linked Glycans for Increased Ion Abundance in Electrospray Ionization Mass Spectrometry" S.H. Walker, L.M. Lilley, M.F. Enamorado, D.L. Comins, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2011, 22, 8, 1309-1317.
  • 162. "Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for the Relative Quantification of Protein Expression", T.S. Collier, S.M. Randall, P. Sarkar, B.M, Rao, R.A. Dean and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2011, 25, 17, 2524-2532.
  • 163. "Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows", E. Gokce1, C.M. Shuford, William L. Franck, R.A. Dean, and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2011, 22, 12, 2269-2275.
  • 164. "Spectral Accuracy and Sulfur Counting Capabilities of the LTQ-FT and the LTQ-Orbitrap for Small Molecule Analysis", S.L. Blake, S.H. Walker, D.C. Muddiman, D. Hinks, K.R. Beck, Journal of the American Society for Mass Spectrometry, 2011, 22, 12, 2269-2275.
  • 165. "Stable-Isotope Labeled Hydrophobic Hydrazide Reagents for the Relative Quantification of N-linked Glycans by Electrospray Ionization Mass Spectrometry", S.H. Walker, J. Budhathoki-Uprety, B.M. Novak, and D.C. Muddiman, Analytical Chemistry, 2011, 83, 17, 6738-6745.
  • 166. "Global Optimization of the IR Matrix-Assisted Laser Desorption Ionization (IR MALDESI) Source for Mass Spectrometry Using Statistical Design of Experiments" J.A. Barry and D.C. Muddiman, Rapid Communications in Mass Spectrometry, 2011, 25, 23, 3527-3536.
  • 167. "Facile Self-Assembly of Supramolecular Hexakisferrocenyl Triangles via Coordination-Driven Self-Assembly and Their Electrochemical Behavior" Z. Guang-Zhen, L. Quan-Jie, L.J. Chen, H.W. Tan, C.H. Wang, D.A. Lehman, D.C. Muddiman, H.B. Yang, Organometallics, 2011, 30, 13, 3637-3642.
  • 168. "Membrane Protein Complexes Catalyze both 4- and 3-hydroxylation of cinnamic acid Derivatives in Monolignol Biosynthesis", H.C. Chen, Q.Z. Li, C.M. Shuford, J. Liu, D.C. Muddiman, R.R. Sederoff, V.L. Chiang, Proceedings of the National Academy of Sciences of the United States of America, 2011, 108, 52, 21253-21258.

2012Back to top

  • 169. "Absolute Quantification of Glutathione and Cysteine in Aquatic Insects using Isotope Dilution and Selected Reaction Monitoring" C.M. Shuford, M.D. Poteat, D.B. Buchwalter, D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2012, 402, 1, 357-366.
  • 170. "The Subcellular Proteome of Undifferentiated Human Embryonic Stem Cells", P. Sarkar, T.S. Collier, S.M. Randall, D.C. Muddiman, B.M. Rao, Proteomics, 2012, 12, 3, 421-430.
  • 171. "Comprehensive Quantification of Monolignol-pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry", C.M. Shuford, Q. Li, Y-H Sun, H-C Chen, J. Wang, R. Shi, R.R. Sederoff, V.L. Chiang, D.C. Muddiman, Journal of Proteomics Research, 2012, 11, 6, 3390-3404.
  • 172. "Evidence for Complex Molecular Architectures for Solvent-Extracted Lignins", S.E. Harton, S.V. Pingali, G.A. Nunnery, D.A. Baker, S.H. Walker, D.C. Muddiman, T. Koga, T.G. Rials, V.S. Urban, and P. Langan, ACS Macro Letters, 2012, 1, 5, 568-573.
  • 173. "Peptide production and decay rates affect the quantitative accuracy of protein cleavage isotope dilution mass spectrometry (PC-IDMS), C.M. Shuford, R.R. Sederoff, V.L. Chiang, and D.C. Muddiman, Molecular & Cellular Proteomics, 2012, 1, 9, 814-823.
  • 174. "Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis", J.P. Wang, C.M. Shuford, Q. Li, J. Song, Y.C. Lin, Y.H. Sun, H.C. Chen, C.M. Williams, D.C. Muddiman, R.R. Sederoff and V.L. Chiang, Planta, 2012, 236, 3, 795-808.
  • 175. "Polyubiquitin is Required for Growth, Development, and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae" PLOS ONE, 2012, 7, 8, e42868.
  • 176. "Multi-peptide nLC-PC-IDMS-SRM-based Assay for the Quantification of Biomarkers in the Chicken Ovarian Cancer Model", G.L. Andrews-Kingon, J.N. Petitte, D.C. Muddiman, A.M. Hawkridge, Methods, 2012, submitted.
  • 177. "Villous cytotrophoblasts from human embryonic stem cells are multipotent and mimic mouse trophoblast stem cells", Development, 2012, in revision.
  • 178. "Probing polyketide synthase machinery using engineered promiscuous acyl-CoA synthetases", I. Koryakina, J. McArthur, S. Randall, M. Draelos, E.M. Musiol, D.C. Muddiman, T. Weber, G.J. Williams, ACS Chemical Biology, 2012, in press.
  • 179. "Systematic Comparison of Reverse Phase and Hydrophillic Interaction Liquid Chromatography Platforms for the Analysis of N-Linked Glycans", S.H. Walker, B.C. Carlisle, D.C. Muddiman, Analytical Chemistry, 2012, 84, 19, 8198-8206.
  • 180. "Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Imaging Source Coupled to a FT-ICR Mass Spectrometer", G. Robichaud, J.A. Barry, K.P. Garrard, D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2012, in press. (doi:10.1007/s13361-012-0505-9)
  • 181. "Direct Analysis of Textile Fabrics and Dyes using IR Matrix-Assisted Laser Desorption Electrospray Ionization (MALDESI) Mass Spectrometry", K.H. Cochran, J.A. Barry, D.C. Muddiman, D. Hinks, Analytical Chemistry, 2012, in press.

2013Back to top

  • 182. "In-Depth Analysis of the Magnaporthe oryzae Conidial Proteome", E. Gokce, W.L. Franck, Y. Oh, R.A. Dean, D.C. Muddiman, Journal of Proteome Research, 2013, in press.

Review Articles (peer-reviewed)

Back to top

  • 1. "Application of Secondary Ion and Matrix-Assisted Laser Desorption-Ionization Time-of-Flight Mass Spectrometry for the Quantitative Analysis of Biological Molecules,"
    D.C. Muddiman, A.I. Gusev, and D.M. Hercules,
    Mass Spectrometry Reviews, 1995, 14, 383-429.
  • 2. "Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry: Instrumentation and Applications,"
    D.C. Muddiman, R. Bakhtiar, S.A. Hofstadler, and R.D. Smith,
    Journal of Chemical Education, 1997, 74, 1288.
  • 3. "Sequencing and Characterization of Larger Oligonucleotides by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
    D.C. Muddiman and R.D. Smith,
    Reviews in Analytical Chemistry, 1998, 17, 1, 1-68.
  • 4. "Perspectives on the use of ESI-FT-ICR Mass Spectrometry for STR Genotyping in the Post-Genome Era,"
    A.P. Null and D.C. Muddiman,
    Journal of Mass Spectrometry (Special Feature), 2001, 36, 589-606.
  • 5. "Nucleic Acid Analysis by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry At the Beginning of the Twenty-First Century,"
    J.L Frahm and D.C. Muddiman,
    Current Pharmaceutical Design, 2005, 11(20), 2593-2613.
  • 6. "Epithelial Ovarian Cancer: Disease Etiology, Treatment and Investigational Gene, Metabolite and Protein Biomarkers,"
    T. Islam Williams, K.L. Toups, D.A. Saggese, K.R. Kalli, W.A. Cliby, and D.C. Muddiman,
    Journal of Proteome Research, 2007, 6(8), 2936-2962.
  • 7. "Mass Spectrometry-Based Biomarker Discovery: Toward a Global Proteome Index of Individuality" A.M. Hawkridge and D.C. Muddiman, Annual Reviews in Analytical Chemistry, 2009, 2, 265-277.
  • 8. "Capitalizing on the Hydrophobic Bias of Electrospray Ionization through Chemical Modification in Mass Spectrometry-Based Proteomics" C.M. Shuford and D.C. Muddiman, Expert Reviews in Proteomics, 2011, 8, 3, 317-323.
  • 9. "Analytical strategies for the global quantification of intact proteins", T.S. Collier and D.C. Muddiman, Amino Acids, 2012, 43, 3, 1109-1117.
  • 10. "Absolute Quantification of Proteins using Mass Spectrometry", C.M. Shuford and D.C. Muddiman, Encyclopedia of Analytical Chemistry, 2013, in press.

Book Chapters

Back to top

  • 1. "Mass Spectrometric Characterization of DNA for Molecular Biology Applications: Advances using MALDI and ESI,"
    D.S. Wunschel, D.C. Muddiman, and R.D. Smith,
    Advances in Mass Spectrometry, 1998, Volume 14, 377-406.
  • 2. "N-linked Global Glycan Profiling by NanoLC Mass Spectrometry" M.S. Bereman, D.C. Muddiman, Methods in Molecular Biology, 2011, 790, 87-97.

Editorials

Back to top

  • 1. "Memoirs, Hercules Lineage, Students, Visiting Scientists and Staff," J.A. Gardella, Jr., F.E. Lytle, and D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2002, 373, 7, 669-675.
  • 2. "In celebration of the 70th birthday of Dr. David M. Hercules," J. A. Gardella, F. E. Lytle, and D. C. Muddiman, Analytical and Bioanalytical Chemistry, 2002, 373, 7, 517-518.
  • 3. "Cancer Biomarkers: How Proteomics is Leading to the Discovery of New Markers," D.C. Muddiman, W.A. Cliby, H.R. Bergen, III, Clinical Laboratory News, 2003, 29, 12-16.
  • 4. "Lewis and Clark Proteomics: Are We There Yet?" D.C. Muddiman, Journal of Proteome Research, 2006, 5, 2, 221-222.
  • 5. "Focus in Honor of James A. McCloskey, Recipient of the 2005 ASMS Award for a Distinguished Contribution in Mass Spectrometry," P.A. Limbach and D.C. Muddiman, Journal of the American Society for Mass Spectrometry, 2006, 17, 10, i1-i2.
  • 6. A Retrospective: John Bennett Fenn (1917-2010), Science, 2011, 331, 6014, 160.
  • 7. John B. Fenn Special Issue Recognizing the Science of Professor John B. Fenn, D.C. Muddiman and S. El-Shall, International Journal of Mass Spectrometry, 2011, 300, 2-3, 72-73.
  • 8. Book Review, Sample Preparation in Biological Mass Spectrometry, Analytical and Bioanalytical Chemistry, 2012.
  • 9. "High-Resolution Mass Spectrometry", H.H. Maurer and D.C. Muddiman, Analytical and Bioanalytical Chemistry, 2012, 403, 5, 1201-1202.

Patents

Back to top

  • 1. Dual Electrospray Ionization Source for Mass Spectrometer
    Inventors: David C. Muddiman, Patrick Caskey, and Michael Burke
    Filed: 02/04/2003, Application Serial No. 60/444,888
    U.S. Utility Patent Filed: 02/04/2004, Application Number: 772229
    Patent Issued 02/07/2006. US Patent Number 6,995,362
  • 2. Naturally Processed Measles Virus Peptides Eluted From Class II HLA Molecules
    Inventors: Gregory Poland, Inna G. Ovsyannikova, Kenneth L. Johnson and David C. Muddiman
    Provisional Patent Application Filed: 05/2004, Application Number: 35,433
    Patent Issued 08/25/2009. US Patent Number 7,579,004
  • 3. Peptide Originating from Vaccinia Virus
    Inventors: Gregory Poland, Inna G. Ovsyannikova, Kenneth L. Johnson and David C. Muddiman
    Provisional Patent Application Filed: 4/21/2006, Application Number: 60,793,984
    Patent Issued 11/24/2009. US Patent Number 7,622,120
  • 4. Naturally Processed Measles Virus Peptides from Class II HLA Molecules
    Inventors: Gregory Poland, Inna G. Ovsyannikova, Kenneth L. Johnson and David C. Muddiman
    Patent Issued 07/17/2012. US Patent Number 8,221,762

Copyright © 2008-2013 David Muddiman. Site design by Ruben Moreno. All rights reserved.